The potential of microbial ecological indicators to guide ecosophisticated management of hydrocarbon-contaminated soils

Soil is an unrenewable natural resource under increasing anthropogenic pressure. One of the main threats to soils, compromising their ability to provide us with the goods and ecosystem services we expect, is pollution. Oil hydrocarbons are the most common soil contaminants, and they disturb not just the biota but also the physicochemical properties of soils. Indigenous soil micro-organisms respond rapidly to changes in the soil ecosystem, and are chronically in direct contact with the hydrophobic pollutants on the soil surfaces. Soil microbial variables could thus serve as an intrinsically relevant indicator of soil quality, to be used in the ecological risk assessment of contaminated and remediated soils. Two contrasting studies were designed to investigate soil microbial ecological responses to hydrocarbons, together with parallel changes in soil physicochemical and ecotoxicological properties. The aim was to identify quantitative or qualitative microbiological variables that would be practicable and broadly applicable for the assessment of the quality and restoration of oil-polluted soil. Soil bacteria commonly react on hydrocarbons as a beneficial substrate, which lead to a positive response in the classical microbiological soil quality indicators; negative impacts were accurately reflected only after severe contamination. Hydrocarbon contaminants become less bioavailable due to weathering processes, and their potentially toxic effects decrease faster than the total concentration. Indigenous hydrocarbon degrader bacteria, naturally present in any terrestrial environment, use specific mechanisms to improve access to the hydrocarbon molecules adsorbed on soil surfaces. Thus when contaminants are unavailable even to the specialised degraders, they should pose no hazard to other biota either. Change in the ratio of hydrocarbon degrader numbers to total microbes was detected to predictably indicate pollutant effects and bioavailability. Also bacterial diversity, a qualitative community characteristic, decreased as a response to hydrocarbons. Stabilisation of community evenness, and community structure that reflected clean reference soil, indicated community recovery. If long-term temporal monitoring is difficult and appropriate clean reference soil unavailable, such comparison could possibly be based on DNA-based community analysis, reflecting past+present, and RNA-based community analysis, showing exclusively present conditions. Microbial ecological indicators cannot replace chemical oil analyses, but they are theoretically relevant and operationally practicable additional tools for ecological risk assessment. As such, they can guide ecologically informed and sustainable ecosophisticated management of oil-contaminated lands.

Degradabilidade in situ e parâmetros ruminais em bovinos alimentados com dietas balanceadas para diferentes ganhos de peso e potenciais de fermentação microbiana

Um experimento foi realizado com o objetivo de avaliar os parâmetros ruminais, a produção de ácidos graxos voláteis e a degradabilidade in situ em tourinhos Santa Gertrudes canulados no rúmen alimentados com dietas compostas de feno de capim-marandu e concentrado. Empregou-se o delineamento em quadrado latino 4 ´ 4, no qual os tratamentos foram compostos dos concentrados, ajustados para ganho de peso corporal (GPC) diário de 0,5 e 1 kg/animal e potencial de fermentação microbiana (y) de 9,5 e 11 g de proteína bruta microbiana/MJ energia metabolizável fermentável. Não foram encontradas interações significativas nem diferenças entre as dietas para pH, concentração molar dos ácidos acético e butírico e proporção molar dos ácidos acético, propiônico e butírico e relação acético:propiônico. Os teores de amônia diferiram entre os potenciais de fermentação microbiana, 14,67 e 20,83 mg/100 mL para baixo e alto, respectivamente, e a concentração molar de ácido propiônico foi diferente entre os potenciais de ganho de peso, 7,62 e 8,94 mM, respectivamente, para baixo e alto ganho de peso. Não foram detectadas diferenças entre dietas para as degradabilidades das frações do feno de capim-marandu e da soja em grão. Houve diferença no parâmetro b e na degradabilidade efetiva a 5%/hora da proteína bruta para os potencias de GPC do milho em grão moído. Para o farelo de soja, ocorreu interação significativa entre os potencias de GPC e de fermentação microbiana para alguns dos parâmetros da MS e PB, o mesmo observado para o farelo de algodão. As diferenças encontradas não justificaram o balanceamento dos concentrados para os diferentes potenciais de produção avaliados.

Digestibilidades parcial e total de dietas com feno de capim-marandu e concentrado balanceadas para diferentes níveis de produção

O experimento foi realizado com o objetivo de avaliar as digestibilidades parcial e total das frações digestíveis de dietas com feno de capim-marandu e concentrado utilizando-se a fibra em detergente ácido indigestível como indicador. Foram utilizados quatro tourinhos da raça Santa Gertrudes, canulados no rúmen e duodeno, distribuídos em delineamento quadrado latino 4 x 4. As dietas foram ajustadas para que os animais tivessem ganhos diários de peso corporal (GPC) de 0,5 e 1 kg/animal, associado a potenciais de fermentação microbiana de 9,5 e 11 g de PB microbiana/MJ em fermentável. Houve efeito das dietas ajustadas para potencial de GPC sobre as ingestões diárias de MS (7,05 e 8,07 kg/animal, respectivamente para 0,5 e 1,0 kg/animal de GPC), mas não daquelas balanceadas para potencial de fermentação microbiana (7,57 kg/animal). O tratamento para GPC diário de 1 kg/animal proporcionou maior digestibilidade total da matéria orgânica e de carboidratos totais (médias de 66,63 e 58,68%, respectivamente) quando comparado ao tratamento para GPC diário de 0,5 kg/animal, que apresentou, para as mesmas variáveis, médias de 61,57 e 53,94%. Os resultados não justificaram a utilização de dietas para maior potencial de fermentação microbiana. As dietas balanceadas para altos ganhos de peso, no entanto, mostraram-se melhores quanto à ingestão e ao aproveitamento dos nutrientes que as formuladas para baixos ganhos de peso.

Aporte de energia, composição e eficiência microbiana em bovinos alimentados com feno de capim-marandu e concentrado balanceados para diferentes ganhos de peso e potenciais de fermentação microbiana

Um experimento foi realizado com o objetivo de avaliar o aporte de energia, a composição de bactérias e a eficiência microbiana por tourinhos Santa Gertrudes canulados no rúmen e no duodeno alimentados com dietas compostas de feno de capim-marandu e concentrado. Empregou-se o delineamento em quadrado latino 4 ´ 4, no qual os tratamentos foram concentrados ajustados para ganho de peso corporal (GPC) diário de 0,5 e 1 kg/animal e potencial de fermentação microbiana (y) de 9,5 e 11 g de PB microbiana/MJ energia metabolizável fermentável. Houve diferença para as concentrações de nutrientes digestíveis totais (NDT) e energia metabolizável fermentável (EMFe) ingeridos e para a composição em matéria orgânica e mineral das bactérias ruminais para as dietas ajustadas para diferentes GPC. Houve interação significativa GPC ´ y para a ingestão de NDT como porcentagem do peso corporal e a composição em PB e carboidratos totais das bactérias ruminais. Não foram encontradas diferenças para os potenciais de fermentação microbiana. A eficiência de síntese microbiana também não diferiu entre as dietas e apresentou valores de 12,7 g PB microbiana/100 g NDT e 9,2 g PB microbiana/MJ EMFe. As diferenças encontradas não justificaram o balanceamento dos concentrados para os diferentes potenciais de fermentação microbiana avaliados.

Avaliação de indicadores para estimativa das digestibilidades parciais e total de dietas em bovinos

Avaliaram-se os indicadores fibra detergente ácido indigestível (FDAi) e óxido crômico (Cr2O3) na estimativa das digestililidades parciais e total das frações nutritivas da dieta. Foram utilizados quatro tourinhos Santa Gertrudes canulados no rúmen e no duodeno, distribuídos em delineamento quadrado latino 4 × 4 (animais ´ período) para estimativa da digestibilidade de quatro dietas compostas de feno de capim-marandu e concentrados, ajustadas para proporcionar ganho de peso corporal diário de 0,5 e 1 kg/animal e potencial de fermentação microbiana de 9,5 e 11 g de PB microbiana/MJ em fermentável. Os suplementos foram formulados com mistura mineral, milho, soja e farelos de soja e algodão. Não houve interação significativa dietas ´ indicadores. À exceção dos coeficientes de digestibilidade intestinal da MS e da FDN, todos os outros coeficientes de digestibilidade (MS, PB e CT) diferiram significativamente entre os indicadores avaliados. Quando utilizado o indicador FDAi, foram registrados maiores valores de digestibilidade ruminal e total e menores coeficientes de digestibilidade intestinal. A FDAi possibilitou melhor estimativa dos coeficientes de digestibilidade dos nutrientes das dietas, quando compostas na sua maior parte de volumosos (57 a 70% da MS).

Desempenho de bezerros em pastagem de capim-marandu recebendo suplementação com concentrados balanceados para diferentes níveis de produção

Avaliou-se o fornecimento de concentrado para bezerros mantidos em pastagens de Brachiaria brizantha cv. Marandu durante a época seca do ano. Utilizaram-se 16 machos não-castrados da raça Canchim, com 7 meses de idade e 250 kg, distribuídos em delineamento inteiramente ao acaso em esquema fatorial 2 × 2, no qual os fatores foram suplementos balanceados para dois potenciais de fermentação microbiana - 9,5 e 11,0 g de proteína bruta microbiana/MJ energia metabolizável fermentável e para ganhos de peso corporal (GPC) de 0,5 e 1,0 kg/dia. Os animais receberam suplementação individual diária por 168 dias, após 21 dias de adaptação. A ingestão diária de forragem foi estimada em 5,91 kg matéria seca/animal. A suplementação para ganho de peso corporal de 0,5 kg/dia proporcionou ganhos de peso e conversão alimentar de 0,94 kg/dia e 2,08 kg suplemento/kg ganho, respectivamente, resultados inferiores aos obtidos para ganho de peso corporal de 1 kg/dia (1,09 kg/dia e 3,18 kg suplemento/kg ganho, respectivamente). Não houve efeito do potencial de fermentação sobre o ganho de peso corporal, a conversão alimentar e a área de olho-de-lombo, no entanto, a espessura final de gordura de cobertura foi maior com o potencial de fermentação mais elevado. A suplementação para ganho de peso corporal de 0,5 kg/dia mostrou melhor resultado econômico, mas não permitiu obter peso apropriado para abate. A suplementação com concentrado formulado para aumentar a eficiência de síntese de proteína microbiana no rúmen, porém reduziu a rentabilidade do sistema.

In vitro evaluation of the fermentation properties and potential prebiotic activity of Agave fructans

Aims: This study was carried out to evaluate in vitro the fermentation properties and the potential prebiotic activity of Agave-fructans extracted from Agave tequilana (Predilife). Methods and Results: Five different commercial prebiotics were compared using 24-h pH-controlled anaerobic batch cultures inoculated with human faecal slurries. Measurement of prebiotic efficacy was obtained by comparing bacterial changes, and the production of short-chain fatty acids (SCFA) was also determined. Effects upon major groups of the microbiota were monitored over 24 h incubations by fluorescence in situ hybridization. SCFA were measured by HPLC. Fermentation of the Agave fructans (Predilife) resulted in a large increase in numbers of bifidobacteria and lactobacilli. Conclusions: Under the in vitro conditions used, this study has shown the differential impact of Predilife on the microbial ecology of the human gut. Significance and Impact of the Study: This is the first study reporting of a potential prebiotic mode of activity for Agave fructans investigated which significantly increased populations of bifidobacteria and lactobacilli compared to cellulose used as a control.

In vitro evaluation of the fermentation properties and potential probiotic activity of Lactobacillus plantarum C4 in batch culture systems

Lactobacillus plantarum C4 has been tested in in vitro pH-controlled anaerobic faecal batch cultures as compared to Lactobacillus rhamnosus GG to determine changes caused to the composition of faecal bacteria. Effects upon major groups of the microbiota and levels of short-chain fatty acids (SCFA) were assessed over 24 h. Concomitantly, hydrophobic character and ability of both bacterial cells to adhere in vitro to Caco-2 cells were investigated. Quantitative analysis of bacterial populations revealed that there was a significant increase in Lactobacillus/Enterococcus numbers in vessels with probiotic supplemented with fructooligosaccharides (FOS), compared to the negative control. L. plantarum C4 showed to have more hydrophilic behaviour and fulfilled better adhesive properties, compared to L. rhamnosus GG. Thus, L. plantarum C4 can modulate the intestinal microbiota in vitro, promoting changes in some numerically and metabolically relevant microbial populations and shifts in the production of SCFA.

Colonic metabolism of dietary polyphenols: influence of structure on microbial fermentation products

The metabolism of chlorogenic acid., naringin, and rutin, representative members of three common families of dietary polyphenols, the hydroxycinnamates, the flavanones, and the flavonols, respectively, was studied in an in vitro mixed culture model of the human colonic microflora. Time- and concentration-dependent degradation of all three compounds was observed, which was associated with the following metabolic events after cleavage of the ester or glycosidic bond: reduction of the aliphatic double bond of the resulting hydroxycinnamate caffeic acid residue; dehydroxylation and ring fission of the heterocyclic C-ring of the resulting deglycosylated flavanone, naringenin, and of the deglycosylated flavonol, quercetin (which differed depending on the substitution). The metabolic events, their sequences, and major phenolic end products, as identified by GC-MS or LC-MS/MS, were elucidated from the structural characteristics of the investigated compounds. The major phenolic end products identified were 3-D-hydroxyphenyl)propionic acid for chlorogenic acid, 3-(4-hydroxyphenyl)-propionic acid and 3-phenylpropionic acid for naringin, and 3-hydroxyphenylacetic acid and 3-(3-hydroxyphenyl)-propionic acid for rutin. The degree of degradation of the compounds studied was significantly influenced by the substrate concentration as well as individual variations in the composition of the fecal flora. The results support extensive metabolism of dietary polyphenols in the colon, depending on substrate concentration and residence time, with resultant formation of simple phenolics, which can be considered biomarkers of colonic metabolism if subsequently absorbed. It is also apparent that a relatively small number of phenolic degradation products are formed in the colon from the diverse group of natural polyphenols. (C) 2003 Elsevier Inc. All rights reserved.

In vitro fermentation and prebiotic potential of novel low molecular weight polysaccharides derived from agar and alginate seaweeds

Fermentation properties and prebiotic potential of novel low molecular weight polysaccharides (LMWPs) derived from agar and alginate bearing seaweeds was investigated. Ten LMWPs were supplemented to pH, temperature controlled anaerobic batch cultures inoculated with human feces from three donors, in triplicate. Microbiota changes were monitored using Fluorescent in-situ hybridization and short chain fatty acids, the fermentation end products were analysed using gas chromatography. Of the ten LMWPs tested, Gelidium seaweed CC2253 of molecular weight 64.64 KDa showed a significant increase in bifidobacterial populations from log(10) 8.06 at 0 h to log(10) 8.55 at 24 h (p = 0.018). For total bacterial populations, alginate powder CC2238 produced a significant increase from log(10) 9.01 at 0 h to log(10) 9.58 at 24 h (p = 0.032). No changes were observed in the other bacterial groups tested viz. Bacteroides, Lactobacilli/Enterococci, Eubacterium rectale/Clostridium coccoides and Clostridium histolyticum. The polysaccharides also showed significant increases in total SCFA production, particularly acetic and propionic acids, indicating that they were readily fermented. In conclusion, some LMWPs derived from agar and alginate bearing seaweeds were fermented by gut bacteria and exhibited potential to be used a novel source of prebiotics.

In vitro evaluation of the fermentation properties and potential prebiotic activity of caprine cheese whey oligosaccharides in batch culture systems

The prebiotic effect of oligosaccharides recovered and purified from caprine whey, was evaluated by in vitro fermentation under anaerobic conditions using batch cultures at 37ºC with human faeces. Effects on key gut bacterial groups were monitored over 24h by fluorescence in situ hybridisation (FISH), which was used to determine a quantitative prebiotic index score. Production of short-chain fatty acids (SCFAs) as fermentation end products was analysed by high-performance liquid chromatography (HPLC). Growth of Bifidobacterium spp was significantly higher (p ≥ 0.05) with the purified oligosaccharides compared to the negative control. Lactic and propionic acids were the main SCFAs produced. Antimicrobial activity of the oligosaccharides was also tested, revealing no inhibition though a decrease in Staphylococcus aureus and Escherichia coli growth. These findings indicate that naturally extracted oligosaccharides from caprine whey could be used as new and valuable source of prebiotics.

Methanogenic potential and microbial community of anaerobic batch reactors at different ethylamine/sulfate ratios

Methylamine and sulfate are compounds commonly found in wastewaters. This study aimed to determine the methanogenic potential of anaerobic reactors containing these compounds and to correlate it with their microbial communities. Batch experiments were performed at different methylamine/sulfate ratios of 0.71, 1.26 and 2.18 (with respect to mass concentration). Control and experimental runs were inoculated with fragmented granular sludge. The maximum specific methane formation rates were approximately 2.3 mmol CH4 L-1 g TVS-1 day-1 for all conditions containing methylamine, regardless of sulfate addition. At the end of the experiment, total ammonium-N and methane formation were proportional to the initial concentrations of methylamine. In the presence of methylamine and sulfate, Firmicutes (46%), Deferribacteres (13%) and Proteobacteria (12%) were the predominant phyla of the Bacteria domain, while Spirochaetes (40%), Deferribacteres (17%) and Bacteroidetes (16%) predominated in the presence of methylamine only. There was no competition for methylamine between sulfate-reducing bacteria and methanogenic archaea.

Taxonomic assessment and biotechnological potential of yeasts hold at the Unesp - Central for microbial resources

Pós-graduação em Ciências Biológicas (Microbiologia Aplicada) - IBRC